species:   Rhsol
pid:       PID0528
parent:    Rhi-milR-158
paralog:   
locus:     KB317887.1:4464-4546
matures:   ['UUAGGAGGUAUAGGUGGACUG', 'GGCAAGUUCUUGCUGUAAGUUCUCAUG']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317887.1:4464-4546

10 out of bounds
21 alignments
19 proper strand
17 stranded perfect matches

       *************************          *******************************          
AAAACAGCCAUUAGGAGGUAUAGGUGGACUGGUUUAACCUUGCCAGGCAAGUUCUUGCUGUAAGUUCUCAUGGCAACUCCUUC
......(((((.((((..(((((..((((((((........)))))......)))..)))))..)))).))))).........
----------UUAGGAGGUAUAGGUGGACUG---------------------------------------------------- l=21 a=0 c
---------------------------------------------GGCAAGUUCUUGCUGUAAGUUCUCAUG----------- l=27 a=0 c*
---------AUUAGGAGGUAUAGGUGGACUGG--------------------------------------------------- l=23 a=5 ma
--------------------------------------------AGGCAAGUUCUUGCUGUAAGUUCUCAUGG---------- l=29 a=0 ma*

--------CAUUAGGAGGUAUAGGaGGACUGG--------------------------------------------------- l=24 a=1 
--------CAUUAGGAGGUAUAGGUGGACUGG--------------------------------------------------- l=24 a=2 
---------AUUAGGAGGUAUAGGUGGACUGG--------------------------------------------------- l=23 a=5 (ma)
----------UUAGGAGGUAUAGGUGGACUGG--------------------------------------------------- l=22 a=2 
----------UUAGGAGGUAUAGGUGGACUGGU-------------------------------------------------- l=23 a=1 
----------UUAGGAGGUAUAGGUGGACUGGUU------------------------------------------------- l=24 a=4 
-----------UAGGAGGUAUAGGUGGACUGGUUUu----------------------------------------------- l=25 a=1 
------------------UAUAGGUGGACUGGUUUAACC-------------------------------------------- l=21 a=2 
---------------------------------------------------UUCUUGCUGUAAGUUCUCAUGGC--------- l=23 a=1 

mb-01111
ax-1001011
ku-01
ss-111111101000
fn-111
